PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038116m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 400aa    MW: 46084.8 Da    PI: 6.7944
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038116mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS113.62.6e-35273996374
               GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                         + Aea++++++e a+ +  r++e   p gd  +Rl  +  + L+++  +      + l+ ++     s+    a+++ + + P  +f+h+ 
  orange1.1g038116m  27 KAYAEAMEAEKKEIAKVIARRINEKFCPIGDVRERLLYHSFQPLNKQAEN------NYLHQEA-----SKVFDEAFEAIYRMIPNGTFAHFR 107
                        5679*******************************************999......3333333.....44555688899************* PP

               GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.........egppslRiTgvgspesg....skeeleetgerLakfAeelgvp 175
                        aN aIlea++ + e +H++Dfd++ G+QWp+++ a a+++         +++ +l++T ++ +e      s+ + eet++rL++ A + g++
  orange1.1g038116m 108 ANMAILEALSYDaEVLHVVDFDMGDGVQWPSMITATAQQQslllqhgviSQQMKLKLTSIKWEEDYeresSQWRFEETKNRLHDCAYSHGLN 199
                        ***********94555*********************9987888777666699********9776678889999****************** PP

               GRAS 176 fefnvlvakrledl..eleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksl...........sPkvvvvveqe..adh. 248
                        ++ + +   +l+dl  e+++++ ++   +E +a n+++ l ++ +++ +   +  ++L++ k+            +  ++++ + e   +  
  orange1.1g038116m 200 LKVKEI---QLQDLvtEVKKMKKNSggkREWVAFNCMHGLPHMGRRRSKR--HVMQFLNMAKDYlaycansktskNRGIITFGDGEnwGKIr 286
                        *****8...44444226777776668889**************9444443..4588888888642222222222144589999988765665 PP

               GRAS 249 nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                        n + F   f + +++y al++s+e ++p+   ++ri +E  ++++ + ++   e+ +   + ++++  ++ +++  ++ v +s++  ++ak 
  orange1.1g038116m 287 NLSCFGSFFESFMDHYQALLESIEWNFPKGLaQARIAMECLFVAPFVDSLALLEEWK---EIKEFGDFQSGFGS--LQGVGFSNESLMEAKV 373
                        7777888778889****************9879999999998888888888888887...56668888888776..5788889999999999 PP

               GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +++  +         ++++vl W++ pLv v aWr
  orange1.1g038116m 374 MVKGEY---------ENEMVLEWRGSPLVRVYAWR 399
                        999888.........679****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.2461388IPR005202Transcription factor GRAS
PfamPF035148.8E-3327399IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
VDVSATLVLP REEMKIDNEL SARHLAKAYA EAMEAEKKEI AKVIARRINE KFCPIGDVRE  60
RLLYHSFQPL NKQAENNYLH QEASKVFDEA FEAIYRMIPN GTFAHFRANM AILEALSYDA  120
EVLHVVDFDM GDGVQWPSMI TATAQQQSLL LQHGVISQQM KLKLTSIKWE EDYERESSQW  180
RFEETKNRLH DCAYSHGLNL KVKEIQLQDL VTEVKKMKKN SGGKREWVAF NCMHGLPHMG  240
RRRSKRHVMQ FLNMAKDYLA YCANSKTSKN RGIITFGDGE NWGKIRNLSC FGSFFESFMD  300
HYQALLESIE WNFPKGLAQA RIAMECLFVA PFVDSLALLE EWKEIKEFGD FQSGFGSLQG  360
VGFSNESLME AKVMVKGEYE NEMVLEWRGS PLVRVYAWR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481416.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A067ESB40.0A0A067ESB4_CITSI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-15GRAS family protein